[問題] Rmpi 安裝請教

看板R_Language作者boshings (bo)時間6年前 (2019/05/07 22:55)推噓0(0推 0噓 12→)

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[問題類型]: 程式諮詢 [軟體熟悉度]: 入門 [問題描述]: 我想在用國網中心HPC主機執行平行運算，Rmpi一直無法安裝成功。嘗試了幾個環境模組仍然失敗。 1) gcc/6.3.0 2) intel/2018_u1 3)openmpi/gcc/64/1.10.3 [程式範例]: > install.packages("Rmpi") Installing package into ‘ /home/u1/ee/R/x86_64-redhat-linux-gnu-library/3.5’ (as ‘lib’ is unspecified) --- Please select a CRAN mirror for use in this session --- trying URL 'https://cran.mtu.edu/src/contrib/Rmpi_0.6-9.tar.gz' Content type 'application/x-gzip' length 106745 bytes (104 KB) ================================================== downloaded 104 KB * installing *source* package ‘Rmpi’ ... ** package ‘Rmpi’ successfully unpacked and MD5 sums checked checking for gcc... gcc -m64 -std=gnu99 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc -m64 -std=gnu99 accepts -g... yes checking for gcc -m64 -std=gnu99 option to accept ISO C89... none needed checking for pkg-config... /usr/bin/pkg-config checking if pkg-config knows about OpenMPI... no checking how to run the C preprocessor... gcc -m64 -std=gnu99 -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking mpi.h usability... yes checking mpi.h presence... yes checking for mpi.h... yes Trying to find libmpi.so or libmpich.a ... checking for main in -lmpi... no libmpi not found. exiting... ERROR: configuration failed for package ‘Rmpi’ * removing ‘/home/u1/ee/R/x86_64-redhat-linux-gnu-library/3.5/Rmpi’ The downloaded source packages are in ‘/tmp/RtmpcVbC04/downloaded_packages’ Warning message: In install.packages("Rmpi") : installation of package ‘Rmpi’ had non-zero exit status [環境敘述]: [ee@clogin1 ~]$ module list Currently Loaded Modulefiles: 1) openmpi/gcc/64/1.10.3 > sessionInfo() R version 3.5.2 (2018-12-20) Platform: x86_64-redhat-linux-gnu (64-bit) Running under: Red Hat Enterprise Linux Matrix products: default BLAS/LAPACK: /usr/lib64/R/lib/libRblas.so locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] compiler_3.5.2 [關鍵字]: Rmpi -- ※ 發信站: 批踢踢實業坊(ptt.cc), 來自: 36.229.137.67 ※ 文章網址: https://www.ptt.cc/bbs/R_Language/M.1557240953.A.5E4.html